Software in Bioinformatics

Authors:

Hailing Fang

Created:

20260412

Updated:

20260412

QC for Dequencing Data

• FastQC

• cutadapt

• Trimmomatic

• fastp

Read Aligner

• BWA

• bowtie2

• Hisat2

• STAR

• Minimap2

• Salmon

• kallisto

Sam File manipulation

• Samtools

• bcftools

scRNA-seq Clustering

• Seurat

• Scanpy

• Monocle

• SingleR

• Harmony

• scvi-tools

• CellBender